Virtuoso SPARQL Query Editor for WikiPathways
About
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Namespace Prefixes
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Inference rules
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RDF views
Default Data Set Name (Graph IRI)
If you want to query the data through the command line or coding environment, you should use the URL
sparql.wikipathways.org/sparql
.
Query Text
#Find all genes that are present in a particular pathway PREFIX wp: <http://vocabularies.wikipathways.org/wp#> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> PREFIX dcterms: <http://purl.org/dc/terms/> select distinct (str(?pathwayTitle) as ?PathwayTitle) ?pathway (str(?label) as ?geneProduct) where { ?geneProduct a wp:GeneProduct . #To select only geneProducts ?geneProduct rdfs:label ?label . ?geneProduct dcterms:isPartOf ?pathway . ?pathway a wp:Pathway ; dc:title ?pathwayTitle . ?pathway dcterms:identifier "WP1560"^^xsd:string . #Filter for WP1560 }
(Security restrictions of this server do not allow you to retrieve remote RDF data, see
details
.)
Results Format
Auto
HTML
HTML (Basic Browsing Links)
Spreadsheet
XML
JSON
Javascript
Turtle
RDF/XML
N-Triples
CSV
TSV
Execution timeout
milliseconds
(values less than 1000 are ignored)
Options
Strict checking of void variables
Log debug info at the end of output (has no effect on some queries and output formats)
Generate SPARQL compilation report (instead of executing the query)
(The result can only be sent back to browser, not saved on the server, see
details
)